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1

Stationary Averaging for Multiscale Continuous Time Markov Chains Using Parallel Replica Dynamics

Wang, Ting, Plecháč, Petr, Aristoff, David

Journal:

Multiscale Modeling and Simulation

Year:

2018

Language:

english

File:

PDF, 452 KB

english, 2018

2

Multilevel coarse graining and nano-pattern discovery in many particle stochastic systems

Evangelia Kalligiannaki, Markos A. Katsoulakis, Petr Plecháč, Dionisios G. Vlachos

Journal:

Journal of Computational Physics

Year:

2012

Language:

english

File:

PDF, 1.24 MB

english, 2012

3

Steady-State Sensitivity Analysis of Continuous Time Markov Chains

Wang, Ting, Plecháč, Petr

Journal:

SIAM Journal on Numerical Analysis

Year:

2019

Language:

english

File:

PDF, 474 KB

english, 2019

4

Visco-elasto-plastic model for martensitic phase transformation in shape-memory alloys

Petr Plecháč, Tomáš Roubíček

Journal:

Mathematical Methods in the Applied Sciences

Year:

2002

Language:

english

File:

PDF, 195 KB

english, 2002

5

Local Numerical Analysis of Hopf Bifurcation

Vladimir Janovsky and Petr Plechac

Journal:

SIAM Journal on Numerical Analysis

Year:

1996

Language:

english

File:

PDF, 1.52 MB

english, 1996

6

Global sensitivity analysis of multiscale properties of porous materials

Um, Kimoon, Zhang, Xuan, Katsoulakis, Markos, Plechac, Petr, Tartakovsky, Daniel M.

Journal:

Journal of Applied Physics

Year:

2018

Language:

english

File:

PDF, 2.47 MB

english, 2018

7

Spin-diffusions and diffusive molecular dynamics

Farmer, Brittan, Luskin, Mitchell, Plecháč, Petr, Simpson, Gideon

Journal:

Modelling and Simulation in Materials Science and Engineering

Year:

2017

Language:

english

File:

PDF, 2.20 MB

english, 2017

8

Spin and Charge Pumping by a Steady or Pulse-Current-Driven Magnetic Domain Wall: A Self-Consistent Multiscale Time-Dependent Quantum-Classical Hybrid Approach

Petrović, Marko D., Popescu, Bogdan S., Bajpai, Utkarsh, Plecháč, Petr, Nikolić, BranislavK.

Journal:

Physical Review Applied

Year:

2018

Language:

english

File:

PDF, 1.50 MB

english, 2018

9

Path space force matching and relative entropy methods for coarse-graining molecular systems at transient regimes

Kalligiannaki, Evangelia, Katsoulakis, Markos, Plechac, Petr, Harmandaris, Vagelis

Journal:

Procedia Computer Science

Year:

2018

Language:

english

File:

PDF, 491 KB

english, 2018

10

Accelerated scale bridging with sparsely approximated Gaussian learning

Wang, Ting, Leiter, Kenneth W., Plecháč, Petr, Knap, Jaroslaw

Journal:

Journal of Computational Physics

Year:

2020

Language:

english

File:

PDF, 614 KB

english, 2020

11

On self-similar singular solutions of the complex Ginzburg-Landau equation

Petr Plecháč, Vladimír Šverák

Journal:

Communications on Pure and Applied Mathematics

Year:

2001

Language:

english

File:

PDF, 637 KB

english, 2001

12

Numerical and Statistical Methods for

Markos A. Katsoulakis, Petr Plecháč, Luc Rey-Bellet

Journal:

Journal of Scientific Computing

Year:

2008

Language:

english

File:

PDF, 863 KB

english, 2008

13

Quantum spin transfer torque induced nonclassical magnetization dynamics and electron-magnetization entanglement

Mondal, Priyanka, Bajpai, Utkarsh, Petrović, Marko D., Plecháč, Petr, Nikolić, Branislav K.

Journal:

Physical Review B

Year:

2019

Language:

english

File:

PDF, 721 KB

english, 2019

14

Numerical Analysis of a Relaxed Variational Model of Hysteresis in Two-Phase Solids

Carstensen, Carsten, Plecháč, Petr

Journal:

ESAIM Mathematical Modelling and Numerical Analysis

Year:

2001

File:

PDF, 338 KB

2001

15

Accelerated scale bridging with sparsely approximated Gaussian learning

Wang, Ting, Leiter, Kenneth W., Plecháč, Petr, Knap, Jaroslaw

Journal:

Journal of Computational Physics

Year:

2020

File:

PDF, 614 KB

2020

16

Computational Error Estimates for Born–Oppenheimer Molecular Dynamics with Nearly Crossing Potential Surfaces

Bayer, Christian, Hoel, Håkon, Kadir, Ashraful, Plecháč, Petr, Sandberg, Mattias, Szepessy, Anders

Journal:

Applied Mathematics Research eXpress

Year:

2015

Language:

english

File:

PDF, 3.50 MB

english, 2015

17

Parallel replica dynamics method for bistable stochastic reaction networks: Simulation and sensitivity analysis

Wang, Ting, Plecháč, Petr

Journal:

The Journal of Chemical Physics

Year:

2017

Language:

english

File:

PDF, 1011 KB

english, 2017

18

Asymptotic analysis of perturbed Takens-Bogdanov points

Vladimír Janovský, Petr Plecháč

Journal:

Journal of Computational and Applied Mathematics

Year:

1991

Language:

english

File:

PDF, 679 KB

english, 1991

19

Microscopic Simulation of Membrane Molecule Diffusion on Corralled Membrane Surfaces

Niehaus, Anne Marie S., Vlachos, Dionisios G., Edwards, Jeremy S., Plechac, Petr, Tribe, Roger

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 355 KB

english, 2008

20

The geometry of generalized force matching and related information metrics in coarse-graining of molecular systems

Kalligiannaki, Evangelia, Harmandaris, Vagelis, Katsoulakis, Markos A., Plecháč, Petr

Journal:

The Journal of Chemical Physics

Year:

2015

Language:

english

File:

PDF, 1001 KB

english, 2015

21

Anharmonic free energy of lattice vibrations in fcc crystals from a mean-field bond

Swinburne, Thomas D., Janssen, Jan, Todorova, Mira, Simpson, Gideon, Plechac, Petr, Luskin, Mitchell, Neugebauer, JÃ¶rg

Journal:

Physical Review B

Year:

2020

File:

PDF, 1.01 MB

2020

22

Numerical solution of the scalar double-well problem allowing microstructure

Carstensen, Carsten, Plecháč, Petr

Journal:

Mathematics of Computation

Year:

1997

Language:

english

File:

PDF, 615 KB

english, 1997

23

Error Analysis of Coarse-Graining for Stochastic Lattice Dynamics

Markos A. Katsoulakis, Petr Plecháč and Alexandros Sopasakis

Journal:

SIAM Journal on Numerical Analysis

Year:

2006

Language:

english

File:

PDF, 2.49 MB

english, 2006

24

Perturbation theory for weakly coupled two-dimensional layers

Tritsaris, Georgios A., Shirodkar, Sharmila N., Kaxiras, Efthimios, Cazeaux, Paul, Luskin, Mitchell, Plecháč, Petr, Cancès, Eric

Journal:

Journal of Materials Research

Year:

2016

Language:

english

File:

PDF, 356 KB

english, 2016

25

Path-space variational inference for non-equilibrium coarse-grained systems

Harmandaris, Vagelis, Kalligiannaki, Evangelia, Katsoulakis, Markos, Plecháč, Petr

Journal:

Journal of Computational Physics

Year:

2016

Language:

english

File:

PDF, 723 KB

english, 2016

26

Error Analysis of Coarse‐Graining for Stochastic Lattice Dynamics

Katsoulakis, Markos A., Plecháč, Petr, Sopasakis, Alexandros

Journal:

SIAM Journal on Numerical Analysis

Year:

2006

Language:

english

File:

PDF, 714 KB

english, 2006

27

Spatial Two-Level Interacting Particle Simulations and Information Theory--Based Error Quantification

Kalligiannaki, Evangelia, Katsoulakis, Markos A., Plecháč, Petr

Journal:

SIAM Journal on Scientific Computing

Year:

2014

Language:

english

File:

PDF, 522 KB

english, 2014

28

Numerical analysis of subspace-breaking Takens-Bogdanov points

JANOVSKÝ, VLADIMIR, PLECHÁČ, PETR

Journal:

IMA Journal of Numerical Analysis

Year:

1995

Language:

english

File:

PDF, 1012 KB

english, 1995

29

Numerical Analysis of Compatible Phase Transitions in Elastic Solids

Carstensen, Carsten, Plechác, Petr

Journal:

SIAM Journal on Numerical Analysis

Year:

2000

Language:

english

File:

PDF, 627 KB

english, 2000

30

Coarse-graining schemes for stochastic lattice systems with short and long-range interactions

Katsoulakis, Markos A., Plecháč, Petr, Rey-Bellet, Luc, Tsagkarogiannis, Dimitrios K.

Journal:

Mathematics of Computation

Year:

2014

Language:

english

File:

PDF, 478 KB

english, 2014

31

Plotting Poetry: On mechanically enhanced reading, 5–7 October 2017, Basel, Switzerland

Martínez Cantón, Clara, Plecháč, Petr, Ruiz Fabo, Pablo, Seláf, Levente

Journal:

Studia Metrica et Poetica

Year:

2018

Language:

english

File:

PDF, 618 KB

english, 2018

32

Local Numerical Analysis of Hopf Bifurcation

Janovský, Vladimír, Plecháč, Petr

Journal:

SIAM Journal on Numerical Analysis

Year:

1996

Language:

english

File:

PDF, 2.05 MB

english, 1996

33

Czech Verse Processing System KVĚTA – Phonetic and Metrical Components

Plecháč, Petr

Journal:

Year:

2016

Language:

english

File:

PDF, 2.11 MB

english, 2016

34

A force-matching Stillinger-Weber potential for MoS 2 : Parameterization and Fisher information theory based sensitivity analysis

Wen, Mingjian, Shirodkar, Sharmila N., Plecháč, Petr, Kaxiras, Efthimios, Elliott, Ryan S., Tadmor, Ellad B.

Journal:

Journal of Applied Physics

Year:

2017

Language:

english

File:

PDF, 832 KB

english, 2017

35

Stochastic averaging and sensitivity analysis for two scale reaction networks

Hashemi, Araz, Núñez, Marcel, Plecháč, Petr, Vlachos, Dionisios G.

Journal:

The Journal of Chemical Physics

Year:

2016

Language:

english

File:

PDF, 1.57 MB

english, 2016

36

Computer-Aided Analysis of Imperfect Bifurcation Diagrams, I. Simple Bifurcation Point and Isola Formation Centre

Vladimír Janovský and Petr Plecháč

Journal:

SIAM Journal on Numerical Analysis

Year:

1992

Language:

english

File:

PDF, 387 KB

english, 1992

37

Mathematical strategies in the coarse-graining of extensive systems: Error quantification and adaptivity

Markos A. Katsoulakis, Petr Plecháč, Luc Rey-Bellet, Dimitrios K. Tsagkarogiannis

Journal:

Journal of Non-Newtonian Fluid Mechanics

Year:

2008

Language:

english

File:

PDF, 716 KB

english, 2008

38

Numerical Analysis of Compatible Phase Transitions in Elastic Solids

Carsten Carstensen and Petr Plechac

Journal:

SIAM Journal on Numerical Analysis

Year:

2000

Language:

english

File:

PDF, 2.12 MB

english, 2000

39

Adaptive algorithms for scalar non-convex variational problems

Carsten Carstensen, Petr Plecháč

Journal:

Applied Numerical Mathematics

Year:

1998

Language:

english

File:

PDF, 676 KB

english, 1998

40

Implicit Mass-matrix Penalization of Hamiltonian Dynamics with Application to Exact Sampling of Stiff Systems

Plecháč, Petr, Rousset, Mathias

Journal:

Multiscale Modeling and Simulation

Year:

2010

Language:

english

File:

PDF, 729 KB

english, 2010

41

Coarse-graining schemes and a posteriori error estimates for stochastic lattice systems

Katsoulakis, Markos A., Plecháč, Petr, Rey-Bellet, Luc, Tsagkarogiannis, Dimitrios K.

Journal:

ESAIM Mathematical Modelling and Numerical Analysis

Year:

2007

Language:

english

File:

PDF, 584 KB

english, 2007

42

Hierarchical fractional-step approximations and parallel kinetic Monte Carlo algorithms

Giorgos Arampatzis, Markos A. Katsoulakis, Petr Plecháč, Michela Taufer, Lifan Xu

Journal:

Journal of Computational Physics

Year:

2012

Language:

english

File:

PDF, 1.57 MB

english, 2012

43

Computer–Aided Analysis of Imperfect Bifurcation Diagrams, I. Simple Bifurcation Point and Isola Formation Centre

Janovský, Vladimír, Plecháč, Petr

Journal:

SIAM Journal on Numerical Analysis

Year:

1992

Language:

english

File:

PDF, 1.44 MB

english, 1992

44

Parallelization, Processor Communication and Error Analysis in Lattice Kinetic Monte Carlo

Arampatzis, Giorgos, Katsoulakis, Markos A., Plecháč, Petr

Journal:

SIAM Journal on Numerical Analysis

Year:

2014

Language:

english

File:

PDF, 400 KB

english, 2014

45

Multibody Interactions in Coarse-Graining Schemes for Extended Systems

Are, Sasanka, Katsoulakis, Markos A., Plecháč, Petr, Rey-Bellet, Luc

Journal:

SIAM Journal on Scientific Computing

Year:

2009

Language:

english

File:

PDF, 390 KB

english, 2009

46

Thermochemistry of gas-phase and surface species via LASSO-assisted subgraph selection

Gu, Geun Ho, Plechac, Petr, Vlachos, Dionisios G.

Journal:

React. Chem. Eng.

Year:

2018

Language:

english

File:

PDF, 2.95 MB

english, 2018

47

Canonical Quantum Observables for Molecular Systems Approximated by Ab Initio Molecular Dynamics

Kammonen, Aku, Plecháč, Petr, Sandberg, Mattias, Szepessy, Anders

Journal:

Annales Henri Poincaré

Year:

2018

Language:

english

File:

PDF, 1.45 MB

english, 2018

48

Path-Space Information Bounds for Uncertainty Quantification and Sensitivity Analysis of Stochastic Dynamics

Dupuis, Paul, Katsoulakis, Markos A., Pantazis, Yannis, Plecháč, Petr

Journal:

SIAM/ASA Journal on Uncertainty Quantification

Year:

2016

Language:

english

File:

PDF, 364 KB

english, 2016

49

Correction to: Canonical Quantum Observables for Molecular Systems Approximated by Ab Initio Molecular Dynamics

Kammonen, Aku, Plecháč, Petr, Sandberg, Mattias, Szepessy, Anders

Journal:

Annales Henri Poincaré

Year:

2019

Language:

english

File:

PDF, 209 KB

english, 2019

50

Mesoscopic Modeling for Continuous Spin Lattice Systems: Model Problems and Micromagnetics Applications

Markos A. Katsoulakis, Petr Plecháč, Dimitrios K. Tsagkarogiannis

Journal:

Journal of Statistical Physics

Year:

2005

Language:

english

File:

PDF, 473 KB

english, 2005

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